- Predicted Gene MLOC_79889
MLOC_79889 FPKM values
| FPKM by Treatment | FPKM by Replicate |

| 
|
| Treatment ID | Treatment Description | Rep 1 FPKM | Rep 2 FPKM | Rep 3 FPKM | Treatment FPKM |
|---|
| EMB | 4-day embryos dissected from germinating grains | 23.3314 | 34.5755 | 31.3944 | 31.0192 |
| LEA | Shoots from the seedlings (10 cm shoot stage) | 29.3254 | 28.6415 | 20.8678 | 22.2834 |
| INF1 | Young developing inflorescences (5mm) | 67.0778 | 69.7877 | 74.0123 | 57.9674 |
| INF2 | Developing inflorescences (1-1.5 cm) | 75.431 | 76.1385 | 72.8864 | 81.7312 |
| ROO | Roots from the seedlings (10 cm shoot stage) | 13.7041 | 23.0404 | 18.9124 | 25.4323 |
| NOD | Developing tillers at six leaf stage, 3rd internode | 11.4088 | 12.3092 | 24.4387 | 43.4209 |
| CAR5 | Developing grain, bracts removed (5 DPA) | 34.0274 | 30.519 | 33.4841 | 31.5322 |
| CAR15 | Developing grain, bracts removed (15 DPA) | 7.23418 | 7.8243 | 8.26316 | 17.3274 |
CDS Structure of MLOC_79889
Members of Gene Cluster
This cluster has a confidence assignment of
non-High Confidence.
The gene has a transcript that is part of a cluster represented by
MLOC_79889.1
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Rice PP6 |
LOC_Os11g34190.1 |
+2 |
3e-53 |
188 |
132/196 (67%) |
13111.m03311 protein expressed protein |
| TAIR PP10 |
AT4G08310.1 |
+2 |
4e-18 |
87 |
80/194 (41%) |
FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Histone chaperone domain CHZ (InterPro:IPR019098); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G44780.2); Has 53711 Blast hits to 33687 proteins in 1618 species: Archae - 142; Bacteria - 4400; Metazoa - 24303; Fungi - 6688; Plants - 2484; Viruses - 449; Other Eukaryotes - 15245 (source: NCBI BLink). | chr4:5249047-5252139 REVERSE LENGTH=504 |