MLOC_79889 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains23.331434.575531.394431.0192
LEAShoots from the seedlings (10 cm shoot stage)29.325428.641520.867822.2834
INF1Young developing inflorescences (5mm)67.077869.787774.012357.9674
INF2Developing inflorescences (1-1.5 cm)75.43176.138572.886481.7312
ROORoots from the seedlings (10 cm shoot stage)13.704123.040418.912425.4323
NODDeveloping tillers at six leaf stage, 3rd internode11.408812.309224.438743.4209
CAR5Developing grain, bracts removed (5 DPA)34.027430.51933.484131.5322
CAR15Developing grain, bracts removed (15 DPA)7.234187.82438.2631617.3274



CDS Structure of MLOC_79889






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_79889.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_79889.1CUST_13389_PI427708083AvailableAvailablecontig_87438 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os11g34190.1 +2 3e-53 188 132/196 (67%) 13111.m03311 protein expressed protein
TAIR PP10 AT4G08310.1 +2 4e-18 87 80/194 (41%) FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Histone chaperone domain CHZ (InterPro:IPR019098); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G44780.2); Has 53711 Blast hits to 33687 proteins in 1618 species: Archae - 142; Bacteria - 4400; Metazoa - 24303; Fungi - 6688; Plants - 2484; Viruses - 449; Other Eukaryotes - 15245 (source: NCBI BLink). | chr4:5249047-5252139 REVERSE LENGTH=504