MLOC_79876 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains15.627512.727113.308112.586
LEAShoots from the seedlings (10 cm shoot stage)9.163513.130222.481710.8364
INF1Young developing inflorescences (5mm)1.391030.8332011.563241.07787
INF2Developing inflorescences (1-1.5 cm)0.4542810.4890030.8344560.616887
ROORoots from the seedlings (10 cm shoot stage)35.714718.387420.807819.7666
NODDeveloping tillers at six leaf stage, 3rd internode6.705035.669357.2644914.3305
CAR5Developing grain, bracts removed (5 DPA)4.646915.816614.013324.63659
CAR15Developing grain, bracts removed (15 DPA)0.7147320.6579120.4681531.59753



CDS Structure of MLOC_79876






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_79876.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK251303.1NoneNoneNoneNone
MLOC_79876.2CUST_6754_PI427708080AvailableAvailablecontig_87365 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os12g32940.1 -1 0.0 624 396/486 (81%) 13112.m03359 protein transporter family protein, putative, expressed
TAIR PP10 AT3G18830.1 -1 4e-136 412 245/481 (51%) | Symbols: ATPLT5, PMT5, ATPMT5 | polyol/monosaccharide transporter 5 | chr3:6489000-6491209 REVERSE LENGTH=539