MLOC_79856 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains11.20985.996817.777916.90465
LEAShoots from the seedlings (10 cm shoot stage)5.981124.369358.732564.31588
INF1Young developing inflorescences (5mm)3.728525.906694.933984.0089
INF2Developing inflorescences (1-1.5 cm)3.238633.613433.355943.6148
ROORoots from the seedlings (10 cm shoot stage)16.72397.580458.614358.18678
NODDeveloping tillers at six leaf stage, 3rd internode2.033254.028573.850858.07172
CAR5Developing grain, bracts removed (5 DPA)7.8564510.29387.464978.02123
CAR15Developing grain, bracts removed (15 DPA)3.099141.578031.705155.27853



CDS Structure of MLOC_79856






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_79856.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_79856.1CUST_10649_PI427708083AvailableAvailablecontig_87276 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os03g02390.1 +3 3e-69 221 129/166 (78%) 13103.m00195 protein mitochondrial import inner membrane translocase subunit Tim17, putative, expressed
TAIR PP10 AT1G17530.1 +3 6e-48 164 88/158 (56%) | Symbols: ATTIM23-1, TIM23-1 | translocase of inner mitochondrial membrane 23 | chr1:6027723-6028286 FORWARD LENGTH=187