MLOC_79728 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains49.728640.264850.111645.666
LEAShoots from the seedlings (10 cm shoot stage)12.904111.59917.608129.13221
INF1Young developing inflorescences (5mm)14.699520.110827.246217.827
INF2Developing inflorescences (1-1.5 cm)0.666310.4526941.275440.803257
ROORoots from the seedlings (10 cm shoot stage)34.744732.813925.065538.9974
NODDeveloping tillers at six leaf stage, 3rd internode104.17487.9102236.171384.481
CAR5Developing grain, bracts removed (5 DPA)3.218671.924893.108232.68027
CAR15Developing grain, bracts removed (15 DPA)0.7176150.6094930.6965991.61813



CDS Structure of MLOC_79728






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_79728.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK249669.1NoneNoneNoneNone
MLOC_79728.1CUST_6748_PI427708080AvailableAvailablecontig_8668 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os04g43800.1 +1 0.0 1075 553/592 (93%) 13104.m04357 protein phenylalanine ammonia-lyase, putative, expressed
TAIR PP10 AT2G37040.1 +1 0.0 911 466/592 (79%) | Symbols: PAL1, ATPAL1 | PHE ammonia lyase 1 | chr2:15557602-15560237 REVERSE LENGTH=725