MLOC_79676 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains21.444116.115920.498814.7999
LEAShoots from the seedlings (10 cm shoot stage)51.030261.283666.74238.7705
INF1Young developing inflorescences (5mm)12.583814.708417.68739.77197
INF2Developing inflorescences (1-1.5 cm)3.520323.174853.502363.06689
ROORoots from the seedlings (10 cm shoot stage)29.986314.295612.052215.0349
NODDeveloping tillers at six leaf stage, 3rd internode87.343217.615242.948353.1039
CAR5Developing grain, bracts removed (5 DPA)15.495210.141613.777810.3836
CAR15Developing grain, bracts removed (15 DPA)2.927862.39432.896835.10198



CDS Structure of MLOC_79676






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_79676.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_79676.1CUST_13379_PI427708083AvailableAvailablecontig_8628 (Not mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os04g37710.1 -1 3e-49 167 81/92 (88%) 13104.m03608 protein serine hydrolase domain containing protein, expressed
TAIR PP10 AT4G24380.2 -1 2e-35 128 61/96 (64%) CONTAINS InterPro DOMAIN/s: Serine hydrolase (InterPro:IPR005645); BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT5G65400.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr4:12612554-12613310 FORWARD LENGTH=171