MLOC_79660 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains2.087833.399293.068073.36431
LEAShoots from the seedlings (10 cm shoot stage)1.829680.3088810.2977120.744119
INF1Young developing inflorescences (5mm)11.800211.586410.497710.0795
INF2Developing inflorescences (1-1.5 cm)11.952913.51289.6785114.6029
ROORoots from the seedlings (10 cm shoot stage)0.310381.376181.029231.64781
NODDeveloping tillers at six leaf stage, 3rd internode0.2140810.2650230.0794420.84615
CAR5Developing grain, bracts removed (5 DPA)3.423833.652463.41423.8698
CAR15Developing grain, bracts removed (15 DPA)1.132031.021431.212262.71492



CDS Structure of MLOC_79660






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_79660.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_79660.1CUST_16656_PI427708080AvailableAvailablecontig_86225 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os03g48490.1 -3 0.0 1066 686/1165 (59%) 13103.m05233 protein centromere protein, putative, expressed
TAIR PP10 AT4G38070.1 -3 1e-79 292 272/998 (27%) basic helix-loop-helix (bHLH) DNA-binding superfamily protein | chr4:17876535-17882569 FORWARD LENGTH=1513