MLOC_79606 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains26.324619.272622.165218.5124
LEAShoots from the seedlings (10 cm shoot stage)8.577683.230125.534344.44607
INF1Young developing inflorescences (5mm)34.617334.368930.928824.9337
INF2Developing inflorescences (1-1.5 cm)20.829826.017734.581425.8101
ROORoots from the seedlings (10 cm shoot stage)25.134519.982818.515520.2801
NODDeveloping tillers at six leaf stage, 3rd internode1.609082.588343.368077.22195
CAR5Developing grain, bracts removed (5 DPA)20.547121.613520.763817.4204
CAR15Developing grain, bracts removed (15 DPA)3.277912.672821.837595.75663



CDS Structure of MLOC_79606






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_79606.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_79606.1CUST_13377_PI427708083AvailableAvailablecontig_85889 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os10g39410.1 +1 1e-16 74 35/35 (100%) 13110.m03607 protein Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed
TAIR PP10 AT1G07660.2 +1 4e-17 74 35/35 (100%) Histone superfamily protein | chr1:2369212-2369523 FORWARD LENGTH=86