MLOC_79498 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains171.961141.735143.249163.884
LEAShoots from the seedlings (10 cm shoot stage)174.076265.023332.962227.121
INF1Young developing inflorescences (5mm)29.814336.749141.902234.7295
INF2Developing inflorescences (1-1.5 cm)47.350651.399155.913463.1887
ROORoots from the seedlings (10 cm shoot stage)760.133570.605441.846720.762
NODDeveloping tillers at six leaf stage, 3rd internode158.148259.127191.156768.833
CAR5Developing grain, bracts removed (5 DPA)131.609151.499124.106153.558
CAR15Developing grain, bracts removed (15 DPA)17.497417.198218.994947.2925



CDS Structure of MLOC_79498






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_79498.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK361896NoneNoneNoneNone
MLOC_79498.2CUST_6739_PI427708080AvailableAvailablecontig_85326 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os02g27030.1 -1 0.0 645 306/351 (87%) 13102.m02936 protein cysteine proteinase 1 precursor, putative, expressed
TAIR PP10 AT4G39090.1 -1 1e-177 509 246/347 (71%) | Symbols: RD19, RD19A | Papain family cysteine protease | chr4:18215826-18217326 REVERSE LENGTH=368