MLOC_79305 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains7.289114.644515.018795.58306
LEAShoots from the seedlings (10 cm shoot stage)7.557581.498073.180443.30593
INF1Young developing inflorescences (5mm)0.9935140.9728571.258741.01487
INF2Developing inflorescences (1-1.5 cm)1.408392.158992.305872.47467
ROORoots from the seedlings (10 cm shoot stage)8.447695.419552.994386.39514
NODDeveloping tillers at six leaf stage, 3rd internode10.150519.47175.920748.2132
CAR5Developing grain, bracts removed (5 DPA)11.704711.96949.9179212.6871
CAR15Developing grain, bracts removed (15 DPA)0.5881490.3641270.8171251.53447



CDS Structure of MLOC_79305






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_79305.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_79305.1CUST_16621_PI427708080AvailableAvailablecontig_84362 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os11g31590.1 +2 2e-131 392 206/268 (77%) 13111.m03062 protein armadillo, putative, expressed
TAIR PP10 AT5G50900.1 +2 3e-44 163 109/267 (41%) ARM repeat superfamily protein | chr5:20705051-20706718 REVERSE LENGTH=555