MLOC_79155 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains12.759415.40316.277514.5159
LEAShoots from the seedlings (10 cm shoot stage)11.482112.549912.899410.1178
INF1Young developing inflorescences (5mm)16.743119.788220.935515.5919
INF2Developing inflorescences (1-1.5 cm)17.655821.509220.528521.4147
ROORoots from the seedlings (10 cm shoot stage)13.996116.370914.504218.554
NODDeveloping tillers at six leaf stage, 3rd internode8.1377712.320114.424540.9655
CAR5Developing grain, bracts removed (5 DPA)18.214118.942717.33517.3898
CAR15Developing grain, bracts removed (15 DPA)2.577462.835282.662276.03433



CDS Structure of MLOC_79155






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_79155.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK368928NoneNoneNoneNone
MLOC_79155.1CUST_18478_PI427708080AvailableAvailablecontig_83686 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g41630.1 -2 0.0 838 433/485 (89%) 13101.m04269 protein serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B, putative, expressed
TAIR PP10 AT1G17720.1 -2 0.0 731 388/493 (79%) | Symbols: ATB BETA | Protein phosphatase 2A, regulatory subunit PR55 | chr1:6093949-6098065 REVERSE LENGTH=501