MLOC_79077 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.5782730.4450920.5273950.414462
LEAShoots from the seedlings (10 cm shoot stage)2.125580.6347320.5071210.902559
INF1Young developing inflorescences (5mm)0.05987220.17642900.0845066
INF2Developing inflorescences (1-1.5 cm)0.1855710.043012900.136381
ROORoots from the seedlings (10 cm shoot stage)5.176626.3035114.27896.46234
NODDeveloping tillers at six leaf stage, 3rd internode3.966891.770151.741354.93975
CAR5Developing grain, bracts removed (5 DPA)0.4532041.474921.429890.825854
CAR15Developing grain, bracts removed (15 DPA)00.066371600.112672



CDS Structure of MLOC_79077






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_79077.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK252948.1NoneNoneNoneNone
MLOC_79077.1CUST_6721_PI427708080AvailableAvailablecontig_83252 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os05g12320.1 -2 1e-113 337 175/243 (72%) 13105.m01340 protein nodulin MtN3 family protein, putative, expressed
TAIR PP10 AT5G53190.1 -2 7e-64 209 117/220 (53%) | Symbols: SWEET3, AtSWEET3 | Nodulin MtN3 family protein | chr5:21572417-21574284 REVERSE LENGTH=263