MLOC_79059 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains1.512643.861063.367421.99309
LEAShoots from the seedlings (10 cm shoot stage)6.644639.460889.323444.84516
INF1Young developing inflorescences (5mm)6.39487.098018.222794.06219
INF2Developing inflorescences (1-1.5 cm)13.030812.567511.29659.77131
ROORoots from the seedlings (10 cm shoot stage)0.6514313.029232.206371.81308
NODDeveloping tillers at six leaf stage, 3rd internode1.183043.304194.212487.51906
CAR5Developing grain, bracts removed (5 DPA)9.886949.586178.361346.10526
CAR15Developing grain, bracts removed (15 DPA)9.165547.9787410.095814.1374



CDS Structure of MLOC_79059






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_79059.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_79059.2NoneAvailableAvailablecontig_83153 (Not mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os04g51700.1 -3 8e-16 84 45/63 (71%) 13104.m05279 protein DNA ligase I, ATP-dependent family protein, expressed
TAIR PP10 AT5G57160.1 -3 5e-11 67 35/68 (51%) | Symbols: ATLIG4, LIG4 | DNA ligase IV | chr5:23155150-23161688 REVERSE LENGTH=1219