- Predicted Gene MLOC_79059
MLOC_79059 FPKM values
| FPKM by Treatment | FPKM by Replicate |

| 
|
| Treatment ID | Treatment Description | Rep 1 FPKM | Rep 2 FPKM | Rep 3 FPKM | Treatment FPKM |
|---|
| EMB | 4-day embryos dissected from germinating grains | 1.51264 | 3.86106 | 3.36742 | 1.99309 |
| LEA | Shoots from the seedlings (10 cm shoot stage) | 6.64463 | 9.46088 | 9.32344 | 4.84516 |
| INF1 | Young developing inflorescences (5mm) | 6.3948 | 7.09801 | 8.22279 | 4.06219 |
| INF2 | Developing inflorescences (1-1.5 cm) | 13.0308 | 12.5675 | 11.2965 | 9.77131 |
| ROO | Roots from the seedlings (10 cm shoot stage) | 0.651431 | 3.02923 | 2.20637 | 1.81308 |
| NOD | Developing tillers at six leaf stage, 3rd internode | 1.18304 | 3.30419 | 4.21248 | 7.51906 |
| CAR5 | Developing grain, bracts removed (5 DPA) | 9.88694 | 9.58617 | 8.36134 | 6.10526 |
| CAR15 | Developing grain, bracts removed (15 DPA) | 9.16554 | 7.97874 | 10.0958 | 14.1374 |
CDS Structure of MLOC_79059
Members of Gene Cluster
This cluster has a confidence assignment of
non-High Confidence.
The gene has a transcript that is part of a cluster represented by
MLOC_79059.2
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Rice PP6 |
LOC_Os04g51700.1 |
-3 |
8e-16 |
84 |
45/63 (71%) |
13104.m05279 protein DNA ligase I, ATP-dependent family protein, expressed |
| TAIR PP10 |
AT5G57160.1 |
-3 |
5e-11 |
67 |
35/68 (51%) |
| Symbols: ATLIG4, LIG4 | DNA ligase IV | chr5:23155150-23161688 REVERSE LENGTH=1219 |