MLOC_79050 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains8.861584.415397.002165.58574
LEAShoots from the seedlings (10 cm shoot stage)95.429654.183373.473956.2961
INF1Young developing inflorescences (5mm)0.05330500.1518810.0886223
INF2Developing inflorescences (1-1.5 cm)0.6111051.782671.669141.20161
ROORoots from the seedlings (10 cm shoot stage)0.6518384.668390.9945343.56257
NODDeveloping tillers at six leaf stage, 3rd internode4.4077410.51970.81668321.52
CAR5Developing grain, bracts removed (5 DPA)0.3251990.7986980.5366180.395563
CAR15Developing grain, bracts removed (15 DPA)0.11768900.6677580.312485



CDS Structure of MLOC_79050






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_79050.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK249732.1NoneNoneNoneNone
MLOC_79050.1CUST_6719_PI427708080AvailableAvailablecontig_8313 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os11g24070.1 -2 4e-23 95 51/91 (56%) 13111.m02293 protein LTPL10 - Protease inhibitor/seed storage/LTP family protein precursor, expressed
TAIR PP10 AT5G59310.1 -2 7e-25 99 49/88 (56%) | Symbols: LTP4 | lipid transfer protein 4 | chr5:23925296-23925772 REVERSE LENGTH=112