MLOC_79046 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains3.7832.340272.122272.64276
LEAShoots from the seedlings (10 cm shoot stage)9.8950415.870417.943712.1647
INF1Young developing inflorescences (5mm)1.332591.598911.678661.28658
INF2Developing inflorescences (1-1.5 cm)0.7716830.8798911.158880.977641
ROORoots from the seedlings (10 cm shoot stage)2.056151.062571.369331.48413
NODDeveloping tillers at six leaf stage, 3rd internode9.5660611.868711.871236.6563
CAR5Developing grain, bracts removed (5 DPA)3.74743.669143.828583.58296
CAR15Developing grain, bracts removed (15 DPA)0.607490.605961.154961.65421



CDS Structure of MLOC_79046






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_79046.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_79046.1CUST_16599_PI427708080AvailableAvailablecontig_83118 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os10g25030.1 -1 2e-101 307 164/205 (80%) 13110.m02104 protein red chlorophyll catabolite reductase, putative, expressed
TAIR PP10 AT4G37000.1 -1 9e-51 175 98/206 (48%) | Symbols: ACD2, ATRCCR | accelerated cell death 2 (ACD2) | chr4:17442627-17443762 FORWARD LENGTH=319