MLOC_79028 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains17.694410.760411.221312.2603
LEAShoots from the seedlings (10 cm shoot stage)11.91755.823169.194627.17884
INF1Young developing inflorescences (5mm)25.296629.18932.994925.8858
INF2Developing inflorescences (1-1.5 cm)31.894125.481530.791833.0758
ROORoots from the seedlings (10 cm shoot stage)25.134317.10319.025419.9058
NODDeveloping tillers at six leaf stage, 3rd internode11.301919.549526.207159.1191
CAR5Developing grain, bracts removed (5 DPA)8.490849.072337.637038.52155
CAR15Developing grain, bracts removed (15 DPA)5.008194.628045.6919912.7227



CDS Structure of MLOC_79028






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_79028.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK362120NoneNoneNoneNone
MLOC_79028.1CUST_6718_PI427708080AvailableAvailablecontig_83035 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g06280.2 +3 0.0 1016 617/915 (67%) 13101.m00616 protein TKL_IRAK_CrRLK1L-1.4 - The CrRLK1L-1 subfamily has homology to the CrRLK1L homolog, expressed
TAIR PP10 AT3G46290.1 +3 0.0 570 365/896 (41%) | Symbols: HERK1 | hercules receptor kinase 1 | chr3:17013009-17015501 FORWARD LENGTH=830