MLOC_78997 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.1739240.2187500.15982
LEAShoots from the seedlings (10 cm shoot stage)9.543258.232410.27787.61177
INF1Young developing inflorescences (5mm)00.063783400.0651384
INF2Developing inflorescences (1-1.5 cm)0000
ROORoots from the seedlings (10 cm shoot stage)0000.353841
NODDeveloping tillers at six leaf stage, 3rd internode0.3196680.3894910.4831711.06329
CAR5Developing grain, bracts removed (5 DPA)0.06985030.1964950.06622770.120784
CAR15Developing grain, bracts removed (15 DPA)0.0485923000.170843



CDS Structure of MLOC_78997






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_78997.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK248728.1NoneNoneNoneNone
MLOC_78997.1CUST_6716_PI427708080AvailableAvailablecontig_82907 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os07g08160.1 +1 1e-35 129 87/115 (76%) 13107.m00805 protein early light-induced protein, chloroplast precursor, putative, expressed
TAIR PP10 AT3G22840.1 +1 1e-22 94 64/113 (57%) | Symbols: ELIP1, ELIP | Chlorophyll A-B binding family protein | chr3:8084628-8085445 REVERSE LENGTH=195