MLOC_78975 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains11.88459.3749910.85669.0634
LEAShoots from the seedlings (10 cm shoot stage)6.586879.8104214.76526.89325
INF1Young developing inflorescences (5mm)12.889515.749315.697811.9608
INF2Developing inflorescences (1-1.5 cm)20.663620.499823.828822.0052
ROORoots from the seedlings (10 cm shoot stage)14.931213.38739.9996711.7516
NODDeveloping tillers at six leaf stage, 3rd internode7.0674910.045616.670624.9358
CAR5Developing grain, bracts removed (5 DPA)13.6115.462213.49812.7989
CAR15Developing grain, bracts removed (15 DPA)8.978748.91328.2786919.8834



CDS Structure of MLOC_78975






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_78975.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_78975.2CUST_13357_PI427708083AvailableAvailablecontig_8280 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os05g01490.1 +2 5e-25 102 50/65 (77%) 13105.m00083 protein ras-related protein, putative
TAIR PP10 AT3G11730.1 +2 2e-24 100 47/67 (70%) | Symbols: ATFP8, ATRABD1, RABD1 | Ras-related small GTP-binding family protein | chr3:3709490-3711397 REVERSE LENGTH=205