MLOC_78880 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0000
LEAShoots from the seedlings (10 cm shoot stage)0000
INF1Young developing inflorescences (5mm)0000
INF2Developing inflorescences (1-1.5 cm)00.071156300.125816
ROORoots from the seedlings (10 cm shoot stage)0000
NODDeveloping tillers at six leaf stage, 3rd internode0000
CAR5Developing grain, bracts removed (5 DPA)7.87666.869346.697867.33492
CAR15Developing grain, bracts removed (15 DPA)0.08449590.4491970.6301390.873921



CDS Structure of MLOC_78880






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_78880.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_78880.1CUST_16578_PI427708080AvailableAvailablecontig_82307 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os02g15710.1 +1 3e-41 139 70/121 (58%) 13102.m01752 protein plastocyanin-like domain containing protein, putative
TAIR PP10 AT2G02850.1 +1 6e-29 107 48/99 (48%) | Symbols: ARPN | plantacyanin | chr2:826630-827720 REVERSE LENGTH=129