MLOC_78844 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains9.374939.6717710.32929.91649
LEAShoots from the seedlings (10 cm shoot stage)8.550863.78344.645934.52391
INF1Young developing inflorescences (5mm)35.877336.050842.297934.6575
INF2Developing inflorescences (1-1.5 cm)66.985550.506460.402167.568
ROORoots from the seedlings (10 cm shoot stage)7.613198.4770514.935310.1168
NODDeveloping tillers at six leaf stage, 3rd internode8.239827.355911.525819.592
CAR5Developing grain, bracts removed (5 DPA)5.974866.440888.196147.16631
CAR15Developing grain, bracts removed (15 DPA)13.486711.051114.73933.4068



CDS Structure of MLOC_78844






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_78844.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_78844.1NoneAvailableAvailablecontig_82140 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os03g29470.1 +1 2e-46 159 88/114 (77%) 13103.m03388 protein transcription initiation factor IID, putative, expressed
TAIR PP10 AT1G54140.1 +1 1e-31 117 57/83 (69%) | Symbols: TAFII21, TAF9 | TATA binding protein associated factor 21kDa subunit | chr1:20214076-20214869 REVERSE LENGTH=183