MLOC_78835 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains92.205757.892261.142957.0027
LEAShoots from the seedlings (10 cm shoot stage)40.223826.705544.395427.0685
INF1Young developing inflorescences (5mm)57.26770.014864.849942.4257
INF2Developing inflorescences (1-1.5 cm)43.598547.486143.016741.2143
ROORoots from the seedlings (10 cm shoot stage)59.382159.90952.057355.9949
NODDeveloping tillers at six leaf stage, 3rd internode44.324135.873141.7451102.449
CAR5Developing grain, bracts removed (5 DPA)50.724456.134854.225841.902
CAR15Developing grain, bracts removed (15 DPA)16.30715.394715.924228.6898



CDS Structure of MLOC_78835






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_78835.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_78835.1CUST_13346_PI427708083AvailableAvailablecontig_8209 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os02g21970.1 +2 2e-63 206 105/105 (100%) 13102.m02462 protein 26S protease regulatory subunit 6B, putative, expressed
TAIR PP10 AT5G58290.1 +2 8e-64 206 105/105 (100%) | Symbols: RPT3 | regulatory particle triple-A ATPase 3 | chr5:23569155-23571116 FORWARD LENGTH=408