- Predicted Gene MLOC_78827
MLOC_78827 FPKM values
FPKM by Treatment | FPKM by Replicate |
|
|
Treatment ID | Treatment Description | Rep 1 FPKM | Rep 2 FPKM | Rep 3 FPKM | Treatment FPKM |
---|
EMB | 4-day embryos dissected from germinating grains | 0 | 0 | 0 | 0 |
LEA | Shoots from the seedlings (10 cm shoot stage) | 0 | 0 | 0 | 0 |
INF1 | Young developing inflorescences (5mm) | 0 | 0 | 0 | 0 |
INF2 | Developing inflorescences (1-1.5 cm) | 0.0887647 | 0.111483 | 0.120375 | 0.111924 |
ROO | Roots from the seedlings (10 cm shoot stage) | 0 | 0 | 0 | 0 |
NOD | Developing tillers at six leaf stage, 3rd internode | 0 | 0 | 0 | 0 |
CAR5 | Developing grain, bracts removed (5 DPA) | 1.73599 | 1.60001 | 1.12306 | 1.43309 |
CAR15 | Developing grain, bracts removed (15 DPA) | 0.0355925 | 0.112876 | 0 | 0.207184 |
CDS Structure of MLOC_78827
Members of Gene Cluster
This cluster has a confidence assignment of
High Confidence.
The gene has a transcript that is part of a cluster represented by
MLOC_78827.1
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)
Database | Hit | Frame | E-value | Score | % Identity | Description |
---|
Rice PP6 |
LOC_Os02g54160.2 |
-1 |
9e-103 |
317 |
196/362 (54%) |
13102.m12340 protein AP2 domain containing protein, expressed |
TAIR PP10 |
AT1G53910.2 |
-1 |
1e-31 |
125 |
109/271 (40%) |
| Symbols: RAP2.12 | related to AP2 12 | chr1:20135242-20136581 FORWARD LENGTH=358 |