MLOC_78806 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains612.752472.673413.421486.021
LEAShoots from the seedlings (10 cm shoot stage)244.243104.095128.88133.564
INF1Young developing inflorescences (5mm)801.625803.081819.712688.199
INF2Developing inflorescences (1-1.5 cm)616.294573.713629.906664.504
ROORoots from the seedlings (10 cm shoot stage)391.455446.53509.243520.157
NODDeveloping tillers at six leaf stage, 3rd internode30.971533.304173.5159130.348
CAR5Developing grain, bracts removed (5 DPA)266.691287.37276.804277.949
CAR15Developing grain, bracts removed (15 DPA)85.455275.930976.4682184.696



CDS Structure of MLOC_78806






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_78806.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK250066.1NoneNoneNoneNone
MLOC_78806.1CUST_6708_PI427708080AvailableAvailablecontig_81969 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os03g60400.1 -1 2e-98 289 142/142 (100%) 13103.m06626 protein 40S ribosomal protein S23, putative, expressed
TAIR PP10 AT5G02960.1 -1 1e-93 276 136/142 (96%) Ribosomal protein S12/S23 family protein | chr5:693280-694396 REVERSE LENGTH=142