MLOC_7880 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.651550.4585320.4123230.464373
LEAShoots from the seedlings (10 cm shoot stage)0.097585500.02491420.0559958
INF1Young developing inflorescences (5mm)1.022731.164320.9254390.829939
INF2Developing inflorescences (1-1.5 cm)1.149981.384731.532491.36055
ROORoots from the seedlings (10 cm shoot stage)0.06273940.1538070.09000280.136355
NODDeveloping tillers at six leaf stage, 3rd internode00.01099470.008477270.0435009
CAR5Developing grain, bracts removed (5 DPA)0.4111160.4699410.3730630.374249
CAR15Developing grain, bracts removed (15 DPA)0.1177980.03921620.03428350.173559



CDS Structure of MLOC_7880






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_7880.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_7880.1NoneAvailableAvailablecontig_140438 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os07g05430.1 +3 8e-30 86 40/65 (62%) 13107.m00496 protein retrotransposon protein, putative, unclassified
TAIR PP10None-----