MLOC_7880 FPKM values
FPKM by Treatment | FPKM by Replicate |
|
|
Treatment ID | Treatment Description | Rep 1 FPKM | Rep 2 FPKM | Rep 3 FPKM | Treatment FPKM |
---|
EMB | 4-day embryos dissected from germinating grains | 0.65155 | 0.458532 | 0.412323 | 0.464373 |
LEA | Shoots from the seedlings (10 cm shoot stage) | 0.0975855 | 0 | 0.0249142 | 0.0559958 |
INF1 | Young developing inflorescences (5mm) | 1.02273 | 1.16432 | 0.925439 | 0.829939 |
INF2 | Developing inflorescences (1-1.5 cm) | 1.14998 | 1.38473 | 1.53249 | 1.36055 |
ROO | Roots from the seedlings (10 cm shoot stage) | 0.0627394 | 0.153807 | 0.0900028 | 0.136355 |
NOD | Developing tillers at six leaf stage, 3rd internode | 0 | 0.0109947 | 0.00847727 | 0.0435009 |
CAR5 | Developing grain, bracts removed (5 DPA) | 0.411116 | 0.469941 | 0.373063 | 0.374249 |
CAR15 | Developing grain, bracts removed (15 DPA) | 0.117798 | 0.0392162 | 0.0342835 | 0.173559 |
CDS Structure of MLOC_7880
Members of Gene Cluster
This cluster has a confidence assignment of
non-High Confidence.
The gene has a transcript that is part of a cluster represented by
MLOC_7880.1
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)
Database | Hit | Frame | E-value | Score | % Identity | Description |
---|
Rice PP6 |
LOC_Os07g05430.1 |
+3 |
8e-30 |
86 |
40/65 (62%) |
13107.m00496 protein retrotransposon protein, putative, unclassified |
TAIR PP10 | None | - | - | - | - | - |