MLOC_78764 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains5.6344816.869413.732311.3442
LEAShoots from the seedlings (10 cm shoot stage)12.03179.929258.586338.14807
INF1Young developing inflorescences (5mm)23.581123.22323.346817.0632
INF2Developing inflorescences (1-1.5 cm)25.072424.589821.808923.3074
ROORoots from the seedlings (10 cm shoot stage)3.2949310.49215.929679.49618
NODDeveloping tillers at six leaf stage, 3rd internode5.608017.588836.5431923.4225
CAR5Developing grain, bracts removed (5 DPA)15.264815.082517.000513.18
CAR15Developing grain, bracts removed (15 DPA)9.448038.070688.3267716.8622



CDS Structure of MLOC_78764






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_78764.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK374769NoneNoneNoneNone
MLOC_78764.1CUST_6703_PI427708080AvailableAvailablecontig_81812 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os12g13150.1 -1 0.0 3425 1817/2445 (74%) 13112.m01393 protein expressed protein
TAIR PP10 AT5G24350.1 -1 0.0 1685 970/2387 (41%) CONTAINS InterPro DOMAIN/s: Secretory pathway Sec39 (InterPro:IPR013244); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:8301537-8310746 FORWARD LENGTH=2376