- Predicted Gene MLOC_78764
MLOC_78764 FPKM values
FPKM by Treatment | FPKM by Replicate |
|
|
Treatment ID | Treatment Description | Rep 1 FPKM | Rep 2 FPKM | Rep 3 FPKM | Treatment FPKM |
---|
EMB | 4-day embryos dissected from germinating grains | 5.63448 | 16.8694 | 13.7323 | 11.3442 |
LEA | Shoots from the seedlings (10 cm shoot stage) | 12.0317 | 9.92925 | 8.58633 | 8.14807 |
INF1 | Young developing inflorescences (5mm) | 23.5811 | 23.223 | 23.3468 | 17.0632 |
INF2 | Developing inflorescences (1-1.5 cm) | 25.0724 | 24.5898 | 21.8089 | 23.3074 |
ROO | Roots from the seedlings (10 cm shoot stage) | 3.29493 | 10.4921 | 5.92967 | 9.49618 |
NOD | Developing tillers at six leaf stage, 3rd internode | 5.60801 | 7.58883 | 6.54319 | 23.4225 |
CAR5 | Developing grain, bracts removed (5 DPA) | 15.2648 | 15.0825 | 17.0005 | 13.18 |
CAR15 | Developing grain, bracts removed (15 DPA) | 9.44803 | 8.07068 | 8.32677 | 16.8622 |
CDS Structure of MLOC_78764
Members of Gene Cluster
This cluster has a confidence assignment of
High Confidence.
The gene has a transcript that is part of a cluster represented by
MLOC_78764.1
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)
Database | Hit | Frame | E-value | Score | % Identity | Description |
---|
Rice PP6 |
LOC_Os12g13150.1 |
-1 |
0.0 |
3425 |
1817/2445 (74%) |
13112.m01393 protein expressed protein |
TAIR PP10 |
AT5G24350.1 |
-1 |
0.0 |
1685 |
970/2387 (41%) |
CONTAINS InterPro DOMAIN/s: Secretory pathway Sec39 (InterPro:IPR013244); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:8301537-8310746 FORWARD LENGTH=2376 |