MLOC_78754 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains17.141117.557319.846822.4341
LEAShoots from the seedlings (10 cm shoot stage)17.998631.551127.906327.8355
INF1Young developing inflorescences (5mm)0.1883190.1479430.3096880.231128
INF2Developing inflorescences (1-1.5 cm)0.02695770.07407780.03471720.0759714
ROORoots from the seedlings (10 cm shoot stage)44.805946.334753.280973.4614
NODDeveloping tillers at six leaf stage, 3rd internode21.597624.974222.194297.8711
CAR5Developing grain, bracts removed (5 DPA)19.346420.921920.737625.7976
CAR15Developing grain, bracts removed (15 DPA)9.5499611.287510.386730.295



CDS Structure of MLOC_78754






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_78754.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK249086.1NoneNoneNoneNone
MLOC_78754.1CUST_6701_PI427708080AvailableAvailablecontig_81777 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os10g25010.1 -1 2e-90 274 136/151 (90%) 13110.m02102 protein OsCML8 - Calmodulin-related calcium sensor protein, expressed
TAIR PP10 AT3G50360.1 -1 2e-67 214 104/148 (70%) | Symbols: ATCEN2, CEN1, CEN2 | centrin2 | chr3:18674421-18675502 FORWARD LENGTH=169