MLOC_78686 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.6276830.4022320.4907710.538109
LEAShoots from the seedlings (10 cm shoot stage)0.4102460.3718121.777160.847087
INF1Young developing inflorescences (5mm)0000
INF2Developing inflorescences (1-1.5 cm)0000
ROORoots from the seedlings (10 cm shoot stage)0.6135510.5964130.7506370.809208
NODDeveloping tillers at six leaf stage, 3rd internode0000
CAR5Developing grain, bracts removed (5 DPA)0000
CAR15Developing grain, bracts removed (15 DPA)1.130741.407711.444653.38825



CDS Structure of MLOC_78686






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_78686.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_78686.1CUST_10478_PI427708083AvailableAvailablecontig_81435 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os08g37180.1 +3 8e-140 406 200/242 (83%) 13108.m03909 protein patatin, putative, expressed
TAIR PP10 AT2G26560.1 +3 5e-86 266 132/238 (55%) | Symbols: PLP2, PLA IIA, PLA2A | phospholipase A 2A | chr2:11293912-11295708 REVERSE LENGTH=407