MLOC_78666 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.5753630.3498950.1730090.36897
LEAShoots from the seedlings (10 cm shoot stage)0.2029020.1613510.1493030.145283
INF1Young developing inflorescences (5mm)0.4386720.7096060.647980.575951
INF2Developing inflorescences (1-1.5 cm)0.5204920.639890.4152850.667644
ROORoots from the seedlings (10 cm shoot stage)0.6151680.5091490.4690910.628244
NODDeveloping tillers at six leaf stage, 3rd internode00.0499010.1024330.298022
CAR5Developing grain, bracts removed (5 DPA)0.3668390.4610990.2876520.421621
CAR15Developing grain, bracts removed (15 DPA)0.13690600.04904290.269268



CDS Structure of MLOC_78666






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_78666.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_78666.1CUST_10475_PI427708083AvailableAvailablecontig_81346 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os02g58300.1 -2 5e-93 282 169/255 (66%) 13102.m06753 protein expressed protein
TAIR PP10 AT1G55890.1 -2 3e-12 68 60/242 (25%) Tetratricopeptide repeat (TPR)-like superfamily protein | chr1:20901364-20902560 FORWARD LENGTH=398