MLOC_78661 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains5.858433.804874.626714.79751
LEAShoots from the seedlings (10 cm shoot stage)2.919853.129983.399082.82491
INF1Young developing inflorescences (5mm)7.700648.492127.089377.00382
INF2Developing inflorescences (1-1.5 cm)8.414477.182918.469269.30273
ROORoots from the seedlings (10 cm shoot stage)6.049795.048034.022076.66656
NODDeveloping tillers at six leaf stage, 3rd internode0.5186030.9440851.572813.95372
CAR5Developing grain, bracts removed (5 DPA)6.724497.426697.179477.63687
CAR15Developing grain, bracts removed (15 DPA)2.451082.005832.434615.66492



CDS Structure of MLOC_78661






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_78661.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_78661.1CUST_16546_PI427708080AvailableAvailablecontig_8133 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g57630.3 -3 6e-150 443 228/371 (61%) 13101.m06117 protein pentatricopeptide containing protein, putative, expressed
TAIR PP10 AT3G13160.1 -3 9e-57 198 114/334 (34%) Tetratricopeptide repeat (TPR)-like superfamily protein | chr3:4229994-4231178 REVERSE LENGTH=394