MLOC_78616 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains74.554831.854932.419538.9528
LEAShoots from the seedlings (10 cm shoot stage)21.91634.145565.974858.86284
INF1Young developing inflorescences (5mm)79.1392100.131108.2971.4352
INF2Developing inflorescences (1-1.5 cm)63.606181.691969.587675.6861
ROORoots from the seedlings (10 cm shoot stage)42.581924.500528.267429.8564
NODDeveloping tillers at six leaf stage, 3rd internode0.5566590.5237990.3024891.48886
CAR5Developing grain, bracts removed (5 DPA)18.074720.762720.310618.3939
CAR15Developing grain, bracts removed (15 DPA)1.540180.8347221.352872.74951



CDS Structure of MLOC_78616






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_78616.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_78616.1CUST_13337_PI427708083AvailableAvailablecontig_81160 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os05g49860.1 -1 2e-23 92 47/47 (100%) 13105.m05340 protein Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed
TAIR PP10 AT5G22880.1 -1 2e-22 89 44/47 (94%) | Symbols: H2B, HTB2 | histone B2 | chr5:7652130-7652567 REVERSE LENGTH=145