- Predicted Gene MLOC_78528
MLOC_78528 FPKM values
| FPKM by Treatment | FPKM by Replicate |
|---|
| 
|
| Treatment ID | Treatment Description | Rep 1 FPKM | Rep 2 FPKM | Rep 3 FPKM | Treatment FPKM |
|---|
| EMB | 4-day embryos dissected from germinating grains | 9.10811 | 36.6912 | 27.7347 | 25.8927 |
| LEA | Shoots from the seedlings (10 cm shoot stage) | 857.713 | 569.712 | 653.128 | 555.065 |
| INF1 | Young developing inflorescences (5mm) | 6.48363 | 1.99163 | 1.97969 | 3.0067 |
| INF2 | Developing inflorescences (1-1.5 cm) | 11.9349 | 11.904 | 18.248 | 14.5937 |
| ROO | Roots from the seedlings (10 cm shoot stage) | 2.12827 | 13.2656 | 28.7489 | 14.2614 |
| NOD | Developing tillers at six leaf stage, 3rd internode | 319.728 | 104.72 | 69.7368 | 279.079 |
| CAR5 | Developing grain, bracts removed (5 DPA) | 98.245 | 82.3561 | 75.4682 | 82.0788 |
| CAR15 | Developing grain, bracts removed (15 DPA) | 2.81394 | 2.95091 | 3.59099 | 6.96007 |
CDS Structure of MLOC_78528
Members of Gene Cluster
This cluster has a confidence assignment of
non-High Confidence.
The gene has a transcript that is part of a cluster represented by
MLOC_78528.2
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Rice PP6 |
LOC_Os01g52240.1 |
-1 |
2e-174 |
493 |
242/268 (90%) |
13101.m05463 protein chlorophyll A-B binding protein, putative, expressed |
| TAIR PP10 |
AT2G34420.1 |
-1 |
1e-164 |
468 |
233/267 (87%) |
| Symbols: LHB1B2, LHCB1.5 | photosystem II light harvesting complex gene B1B2 | chr2:14522716-14523513 REVERSE LENGTH=265 |
