- Predicted Gene MLOC_78519
MLOC_78519 FPKM values
FPKM by Treatment | FPKM by Replicate |
![](/morexGenes/blast_net_images/MLOC_78519_assembly3_WGSMorex_rbca.fasta_treatments.fpkms.png)
| ![](/morexGenes/blast_net_images/MLOC_78519_assembly3_WGSMorex_rbca.fasta_replicates.fpkms.png)
|
Treatment ID | Treatment Description | Rep 1 FPKM | Rep 2 FPKM | Rep 3 FPKM | Treatment FPKM |
---|
EMB | 4-day embryos dissected from germinating grains | 1.51779 | 1.87481 | 2.0976 | 2.06724 |
LEA | Shoots from the seedlings (10 cm shoot stage) | 1.70293 | 2.59416 | 4.55107 | 2.77361 |
INF1 | Young developing inflorescences (5mm) | 1.4805 | 1.46835 | 1.20165 | 1.31097 |
INF2 | Developing inflorescences (1-1.5 cm) | 1.22302 | 1.44162 | 1.40859 | 1.64619 |
ROO | Roots from the seedlings (10 cm shoot stage) | 4.01689 | 3.48449 | 2.63999 | 4.59542 |
NOD | Developing tillers at six leaf stage, 3rd internode | 1.74026 | 1.94132 | 2.49961 | 7.47181 |
CAR5 | Developing grain, bracts removed (5 DPA) | 2.49004 | 3.03743 | 3.46223 | 3.2531 |
CAR15 | Developing grain, bracts removed (15 DPA) | 1.64059 | 1.70877 | 1.94758 | 4.63515 |
CDS Structure of MLOC_78519
Members of Gene Cluster
This cluster has a confidence assignment of
High Confidence.
The gene has a transcript that is part of a cluster represented by
MLOC_78519.1
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)
Database | Hit | Frame | E-value | Score | % Identity | Description |
---|
Rice PP6 |
LOC_Os01g62820.3 |
+2 |
4e-108 |
339 |
270/499 (54%) |
13101.m06737 protein Transcription initiation factor TFIID subunit A containing protein, expressed |
TAIR PP10 |
AT1G17440.2 |
+2 |
5e-39 |
152 |
140/412 (34%) |
| Symbols: EER4, TAF12B | Transcription initiation factor TFIID subunit A | chr1:5984407-5987663 REVERSE LENGTH=683 |