MLOC_78519 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains1.517791.874812.09762.06724
LEAShoots from the seedlings (10 cm shoot stage)1.702932.594164.551072.77361
INF1Young developing inflorescences (5mm)1.48051.468351.201651.31097
INF2Developing inflorescences (1-1.5 cm)1.223021.441621.408591.64619
ROORoots from the seedlings (10 cm shoot stage)4.016893.484492.639994.59542
NODDeveloping tillers at six leaf stage, 3rd internode1.740261.941322.499617.47181
CAR5Developing grain, bracts removed (5 DPA)2.490043.037433.462233.2531
CAR15Developing grain, bracts removed (15 DPA)1.640591.708771.947584.63515



CDS Structure of MLOC_78519






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_78519.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK361272NoneNoneNoneNone
MLOC_78519.1CUST_6692_PI427708080AvailableAvailablecontig_8067 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g62820.3 +2 4e-108 339 270/499 (54%) 13101.m06737 protein Transcription initiation factor TFIID subunit A containing protein, expressed
TAIR PP10 AT1G17440.2 +2 5e-39 152 140/412 (34%) | Symbols: EER4, TAF12B | Transcription initiation factor TFIID subunit A | chr1:5984407-5987663 REVERSE LENGTH=683