- Predicted Gene MLOC_78516
MLOC_78516 FPKM values
FPKM by Treatment | FPKM by Replicate |
![](/morexGenes/blast_net_images/MLOC_78516_assembly3_WGSMorex_rbca.fasta_treatments.fpkms.png)
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Treatment ID | Treatment Description | Rep 1 FPKM | Rep 2 FPKM | Rep 3 FPKM | Treatment FPKM |
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EMB | 4-day embryos dissected from germinating grains | 7.24105 | 4.51461 | 5.35799 | 4.64206 |
LEA | Shoots from the seedlings (10 cm shoot stage) | 4.98549 | 3.91368 | 4.37602 | 3.02171 |
INF1 | Young developing inflorescences (5mm) | 8.96849 | 10.4058 | 11.4614 | 7.73924 |
INF2 | Developing inflorescences (1-1.5 cm) | 10.8109 | 10.605 | 12.3559 | 10.9401 |
ROO | Roots from the seedlings (10 cm shoot stage) | 3.36339 | 4.29177 | 5.27619 | 3.85845 |
NOD | Developing tillers at six leaf stage, 3rd internode | 3.23329 | 2.58951 | 7.39223 | 8.17072 |
CAR5 | Developing grain, bracts removed (5 DPA) | 5.61027 | 5.92499 | 5.72733 | 4.97301 |
CAR15 | Developing grain, bracts removed (15 DPA) | 5.45728 | 4.50394 | 5.09913 | 10.911 |
CDS Structure of MLOC_78516
Members of Gene Cluster
This cluster has a confidence assignment of
non-High Confidence.
The gene has a transcript that is part of a cluster represented by
MLOC_78516.5
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)
Database | Hit | Frame | E-value | Score | % Identity | Description |
---|
Rice PP6 |
LOC_Os01g73150.1 |
+2 |
2e-39 |
94 |
45/70 (64%) |
13101.m07984 protein expressed protein |
TAIR PP10 |
AT1G04945.3 |
+2 |
8e-20 |
65 |
31/62 (50%) |
HIT-type Zinc finger family protein | chr1:1399588-1402651 FORWARD LENGTH=644 |