MLOC_78516 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains7.241054.514615.357994.64206
LEAShoots from the seedlings (10 cm shoot stage)4.985493.913684.376023.02171
INF1Young developing inflorescences (5mm)8.9684910.405811.46147.73924
INF2Developing inflorescences (1-1.5 cm)10.810910.60512.355910.9401
ROORoots from the seedlings (10 cm shoot stage)3.363394.291775.276193.85845
NODDeveloping tillers at six leaf stage, 3rd internode3.233292.589517.392238.17072
CAR5Developing grain, bracts removed (5 DPA)5.610275.924995.727334.97301
CAR15Developing grain, bracts removed (15 DPA)5.457284.503945.0991310.911



CDS Structure of MLOC_78516






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_78516.5
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_78516.5CUST_10465_PI427708083AvailableAvailablecontig_80665 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g73150.1 +2 2e-39 94 45/70 (64%) 13101.m07984 protein expressed protein
TAIR PP10 AT1G04945.3 +2 8e-20 65 31/62 (50%) HIT-type Zinc finger family protein | chr1:1399588-1402651 FORWARD LENGTH=644