MLOC_78511 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains219.678183.131204.677200.171
LEAShoots from the seedlings (10 cm shoot stage)125.67226.230734.016754.9657
INF1Young developing inflorescences (5mm)139.188161.353142.271128.948
INF2Developing inflorescences (1-1.5 cm)95.5009110.1199.9668112.343
ROORoots from the seedlings (10 cm shoot stage)227.342181.834137.512225.139
NODDeveloping tillers at six leaf stage, 3rd internode175.987149.75119.177432.821
CAR5Developing grain, bracts removed (5 DPA)84.818590.654689.990987.5377
CAR15Developing grain, bracts removed (15 DPA)19.924214.851117.589239.6444



CDS Structure of MLOC_78511






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_78511.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK354695NoneNoneNoneNone
MLOC_78511.2CUST_6691_PI427708080AvailableAvailablecontig_80631 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os10g36650.1 +3 0.0 752 373/377 (99%) 13110.m03320 protein actin, putative, expressed
TAIR PP10 AT5G09810.1 +3 0.0 744 368/377 (98%) | Symbols: ACT7 | actin 7 | chr5:3052809-3054220 FORWARD LENGTH=377