MLOC_78452 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains18.210316.783914.576421.4551
LEAShoots from the seedlings (10 cm shoot stage)0000
INF1Young developing inflorescences (5mm)00.01776560.0200030.0420217
INF2Developing inflorescences (1-1.5 cm)0000
ROORoots from the seedlings (10 cm shoot stage)8.674216.13367.9963120.7771
NODDeveloping tillers at six leaf stage, 3rd internode0000
CAR5Developing grain, bracts removed (5 DPA)00.017853800.0284368
CAR15Developing grain, bracts removed (15 DPA)0.1193420.05046370.2175540.324604



CDS Structure of MLOC_78452






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_78452.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK367335NoneNoneNoneNone
MLOC_78452.1CUST_6686_PI427708080AvailableAvailablecontig_80322 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os09g20284.1 -3 0.0 690 330/446 (74%) 13109.m01920 protein amine oxidase, flavin-containing, domain containing protein, expressed
TAIR PP10 AT5G13700.1 -3 2e-147 441 223/458 (49%) | Symbols: ATPAO1, APAO, PAO1 | polyamine oxidase 1 | chr5:4420222-4422974 REVERSE LENGTH=472