MLOC_78431 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains2.777644.4344.226333.706
LEAShoots from the seedlings (10 cm shoot stage)6.413726.337226.59195.38613
INF1Young developing inflorescences (5mm)11.886710.969812.96568.96213
INF2Developing inflorescences (1-1.5 cm)13.152413.290212.808313.307
ROORoots from the seedlings (10 cm shoot stage)1.333843.462212.941263.57251
NODDeveloping tillers at six leaf stage, 3rd internode2.541424.366063.1558313.8407
CAR5Developing grain, bracts removed (5 DPA)8.037198.205698.180257.311
CAR15Developing grain, bracts removed (15 DPA)2.758462.799062.846255.56762



CDS Structure of MLOC_78431






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_78431.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_78431.2CUST_16522_PI427708080AvailableAvailablecontig_80215 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os07g42750.1 -2 1e-117 372 207/279 (74%) 13107.m04478 protein DDT domain containing protein, putative, expressed
TAIR PP10 AT4G12750.1 -2 0.0 689 432/969 (45%) Homeodomain-like transcriptional regulator | chr4:7498009-7503920 REVERSE LENGTH=1131