MLOC_78418 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains2.661912.321532.097352.17303
LEAShoots from the seedlings (10 cm shoot stage)7.337313.71515.6118.84689
INF1Young developing inflorescences (5mm)1.50141.257591.117891.08244
INF2Developing inflorescences (1-1.5 cm)1.043871.186221.213651.22277
ROORoots from the seedlings (10 cm shoot stage)4.295932.21221.913182.53722
NODDeveloping tillers at six leaf stage, 3rd internode4.15996.248113.426419.8082
CAR5Developing grain, bracts removed (5 DPA)2.121932.204711.127751.74321
CAR15Developing grain, bracts removed (15 DPA)0.4810270.1851270.4619850.871147



CDS Structure of MLOC_78418






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_78418.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK359126NoneNoneNoneNone
MLOC_78418.1CUST_6684_PI427708080AvailableAvailablecontig_80185 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os08g21700.1 +1 1e-74 233 109/145 (75%) 13108.m02237 protein DCL, chloroplast precursor, putative, expressed
TAIR PP10 AT3G46630.1 +1 4e-56 185 86/118 (73%) Protein of unknown function (DUF3223) | chr3:17181138-17182346 REVERSE LENGTH=207