MLOC_78352 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0000
LEAShoots from the seedlings (10 cm shoot stage)000.981680.573427
INF1Young developing inflorescences (5mm)000.3472490.210324
INF2Developing inflorescences (1-1.5 cm)0.2304290.43047100.460602
ROORoots from the seedlings (10 cm shoot stage)0000
NODDeveloping tillers at six leaf stage, 3rd internode0.252860.4161380.9515281.48166
CAR5Developing grain, bracts removed (5 DPA)0000
CAR15Developing grain, bracts removed (15 DPA)0000



CDS Structure of MLOC_78352






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_78352.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_78352.1CUST_10446_PI427708083AvailableAvailablecontig_79822 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os05g01994.1 +1 2e-20 82 36/48 (75%) 13105.m00149 protein rab5-interacting protein like, putative, expressed
TAIR PP10 AT5G59410.1 +1 9e-19 77 35/48 (73%) Rab5-interacting family protein | chr5:23959761-23960730 REVERSE LENGTH=130