MLOC_78350 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains29.823117.603417.502721.6004
LEAShoots from the seedlings (10 cm shoot stage)9.39470.5528093.165453.85124
INF1Young developing inflorescences (5mm)33.903344.349540.646837.335
INF2Developing inflorescences (1-1.5 cm)23.40738.390830.232437.4013
ROORoots from the seedlings (10 cm shoot stage)16.601712.011714.750515.5205
NODDeveloping tillers at six leaf stage, 3rd internode0.4344580.2193320.1424510.650858
CAR5Developing grain, bracts removed (5 DPA)15.50920.454420.690620.0934
CAR15Developing grain, bracts removed (15 DPA)0.6166980.2625380.4508321.14336



CDS Structure of MLOC_78350






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_78350.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_78350.1CUST_16506_PI427708080AvailableAvailablecontig_7981 (Not mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os04g41900.1 +3 2e-49 162 73/80 (91%) 13104.m04120 protein expressed protein
TAIR PP10 AT5G16250.1 +3 4e-23 92 44/74 (59%) unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G02640.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:5310264-5310815 REVERSE LENGTH=183