MLOC_78319 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains8.279086.292468.480825.84195
LEAShoots from the seedlings (10 cm shoot stage)4.731344.350885.263943.33775
INF1Young developing inflorescences (5mm)18.775315.461915.304511.0704
INF2Developing inflorescences (1-1.5 cm)15.830913.543410.21212.3041
ROORoots from the seedlings (10 cm shoot stage)3.453974.744524.918154.39151
NODDeveloping tillers at six leaf stage, 3rd internode1.287192.773952.787357.19132
CAR5Developing grain, bracts removed (5 DPA)10.45318.563458.082586.98726
CAR15Developing grain, bracts removed (15 DPA)1.397311.080122.091072.68022



CDS Structure of MLOC_78319






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_78319.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_78319.1CUST_13326_PI427708083AvailableAvailablecontig_79647 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os02g08300.2 -1 2e-24 99 47/58 (81%) 13102.m00956 protein RAD23 DNA repair protein, putative, expressed
TAIR PP10 AT1G79650.3 -1 4e-20 86 39/51 (76%) | Symbols: RAD23, RAD23B | Rad23 UV excision repair protein family | chr1:29972406-29975132 REVERSE LENGTH=351