MLOC_78287 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains12.260329.446121.027325.3175
LEAShoots from the seedlings (10 cm shoot stage)35.051533.189522.58526.0603
INF1Young developing inflorescences (5mm)38.423643.182549.41239.335
INF2Developing inflorescences (1-1.5 cm)90.310958.629852.438176.6642
ROORoots from the seedlings (10 cm shoot stage)10.737420.333823.253424.0105
NODDeveloping tillers at six leaf stage, 3rd internode49.399822.235418.230760.5841
CAR5Developing grain, bracts removed (5 DPA)33.552827.679229.2431.0177
CAR15Developing grain, bracts removed (15 DPA)26.283322.85330.213866.4429



CDS Structure of MLOC_78287






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_78287.4
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_78287.4CUST_13322_PI427708083AvailableAvailablecontig_79514 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os08g30480.1 +2 7e-42 145 70/74 (95%) 13108.m03153 protein clathrin adaptor complex small chain domain containing protein, expressed
TAIR PP10 AT2G19790.1 +2 3e-38 135 63/74 (85%) SNARE-like superfamily protein | chr2:8527302-8528395 FORWARD LENGTH=143