- Predicted Gene MLOC_78287
MLOC_78287 FPKM values
FPKM by Treatment | FPKM by Replicate |
![](/morexGenes/blast_net_images/MLOC_78287_assembly3_WGSMorex_rbca.fasta_treatments.fpkms.png)
| ![](/morexGenes/blast_net_images/MLOC_78287_assembly3_WGSMorex_rbca.fasta_replicates.fpkms.png)
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Treatment ID | Treatment Description | Rep 1 FPKM | Rep 2 FPKM | Rep 3 FPKM | Treatment FPKM |
---|
EMB | 4-day embryos dissected from germinating grains | 12.2603 | 29.4461 | 21.0273 | 25.3175 |
LEA | Shoots from the seedlings (10 cm shoot stage) | 35.0515 | 33.1895 | 22.585 | 26.0603 |
INF1 | Young developing inflorescences (5mm) | 38.4236 | 43.1825 | 49.412 | 39.335 |
INF2 | Developing inflorescences (1-1.5 cm) | 90.3109 | 58.6298 | 52.4381 | 76.6642 |
ROO | Roots from the seedlings (10 cm shoot stage) | 10.7374 | 20.3338 | 23.2534 | 24.0105 |
NOD | Developing tillers at six leaf stage, 3rd internode | 49.3998 | 22.2354 | 18.2307 | 60.5841 |
CAR5 | Developing grain, bracts removed (5 DPA) | 33.5528 | 27.6792 | 29.24 | 31.0177 |
CAR15 | Developing grain, bracts removed (15 DPA) | 26.2833 | 22.853 | 30.2138 | 66.4429 |
CDS Structure of MLOC_78287
Members of Gene Cluster
This cluster has a confidence assignment of
non-High Confidence.
The gene has a transcript that is part of a cluster represented by
MLOC_78287.4
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)
Database | Hit | Frame | E-value | Score | % Identity | Description |
---|
Rice PP6 |
LOC_Os08g30480.1 |
+2 |
7e-42 |
145 |
70/74 (95%) |
13108.m03153 protein clathrin adaptor complex small chain domain containing protein, expressed |
TAIR PP10 |
AT2G19790.1 |
+2 |
3e-38 |
135 |
63/74 (85%) |
SNARE-like superfamily protein | chr2:8527302-8528395 FORWARD LENGTH=143 |