- Predicted Gene MLOC_78265
MLOC_78265 FPKM values
FPKM by Treatment | FPKM by Replicate |
|
|
Treatment ID | Treatment Description | Rep 1 FPKM | Rep 2 FPKM | Rep 3 FPKM | Treatment FPKM |
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EMB | 4-day embryos dissected from germinating grains | 29.4837 | 38.2502 | 40.5773 | 34.7427 |
LEA | Shoots from the seedlings (10 cm shoot stage) | 69.3035 | 62.9547 | 62.5081 | 54.4907 |
INF1 | Young developing inflorescences (5mm) | 16.541 | 16.6464 | 18.2765 | 13.5339 |
INF2 | Developing inflorescences (1-1.5 cm) | 14.4449 | 16.9829 | 16.3622 | 16.2773 |
ROO | Roots from the seedlings (10 cm shoot stage) | 22.9788 | 29.6634 | 28.2243 | 32.7602 |
NOD | Developing tillers at six leaf stage, 3rd internode | 51.1261 | 45.8901 | 36.6287 | 148.023 |
CAR5 | Developing grain, bracts removed (5 DPA) | 17.812 | 18.0513 | 20.5358 | 16.7629 |
CAR15 | Developing grain, bracts removed (15 DPA) | 7.55206 | 6.78257 | 5.78609 | 14.5226 |
CDS Structure of MLOC_78265
Members of Gene Cluster
This cluster has a confidence assignment of
High Confidence.
The gene has a transcript that is part of a cluster represented by
MLOC_78265.1
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)
Database | Hit | Frame | E-value | Score | % Identity | Description |
---|
Rice PP6 |
LOC_Os02g30210.2 |
+1 |
0.0 |
651 |
310/385 (81%) |
13102.m03296 protein OsFBK7 - F-box domain and kelch repeat containing protein, expressed |
TAIR PP10 |
AT1G67480.2 |
+1 |
6e-136 |
409 |
195/338 (58%) |
Galactose oxidase/kelch repeat superfamily protein | chr1:25277294-25278529 FORWARD LENGTH=376 |