MLOC_78237 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains14.775915.982913.339314.3655
LEAShoots from the seedlings (10 cm shoot stage)7.953379.17899.787627.7596
INF1Young developing inflorescences (5mm)42.122840.648341.782633.4433
INF2Developing inflorescences (1-1.5 cm)39.740138.29434.396739.2762
ROORoots from the seedlings (10 cm shoot stage)12.589214.293215.75816.9571
NODDeveloping tillers at six leaf stage, 3rd internode4.312614.6623918.029824.3803
CAR5Developing grain, bracts removed (5 DPA)14.444615.676615.765113.9562
CAR15Developing grain, bracts removed (15 DPA)11.26038.056358.6913320.2785



CDS Structure of MLOC_78237






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_78237.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_78237.1CUST_16496_PI427708080AvailableAvailablecontig_7930 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g48210.1 -3 1e-84 275 167/248 (67%) 13101.m04994 protein PAP/25A associated domain containing protein, putative, expressed
TAIR PP10 AT5G53770.1 -3 2e-41 155 81/149 (54%) Nucleotidyltransferase family protein | chr5:21826733-21829858 FORWARD LENGTH=530