MLOC_78236 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains12.654512.861916.136412.8842
LEAShoots from the seedlings (10 cm shoot stage)4.908254.68495.80694.00409
INF1Young developing inflorescences (5mm)18.531119.872922.752816.4496
INF2Developing inflorescences (1-1.5 cm)19.30820.648418.379820.4607
ROORoots from the seedlings (10 cm shoot stage)14.529413.11079.581613.9016
NODDeveloping tillers at six leaf stage, 3rd internode5.136456.842397.6334620.2382
CAR5Developing grain, bracts removed (5 DPA)8.652667.354516.533296.88443
CAR15Developing grain, bracts removed (15 DPA)3.148563.063733.394967.21928



CDS Structure of MLOC_78236






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_78236.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK363212NoneNoneNoneNone
MLOC_78236.1CUST_6678_PI427708080AvailableAvailablecontig_7930 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g48220.1 +2 0.0 725 385/526 (73%) 13101.m04996 protein protein of unknown function DUF1421 domain containing protein, expressed
TAIR PP10 AT4G28300.1 +2 2e-31 129 131/508 (26%) Protein of unknown function (DUF1421) | chr4:14014860-14016823 FORWARD LENGTH=496