MLOC_78170 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains4.672267.462495.93566.56541
LEAShoots from the seedlings (10 cm shoot stage)10.47238.8852510.16967.76961
INF1Young developing inflorescences (5mm)7.223887.051656.824586.53472
INF2Developing inflorescences (1-1.5 cm)13.454411.132114.681114.8987
ROORoots from the seedlings (10 cm shoot stage)0.8843971.675441.888941.89105
NODDeveloping tillers at six leaf stage, 3rd internode5.599347.785278.5856720.4344
CAR5Developing grain, bracts removed (5 DPA)4.702794.756423.639914.56158
CAR15Developing grain, bracts removed (15 DPA)0.04674220.1088230.2724860.356632



CDS Structure of MLOC_78170






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_78170.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_78170.1CUST_16493_PI427708080AvailableAvailablecontig_7898 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os10g35644.1 -1 2e-80 249 126/155 (81%) 13110.m03205 protein expressed protein
TAIR PP10 AT1G28100.5 -1 4e-66 208 103/157 (66%) unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 64 Blast hits to 64 proteins in 27 species: Archae - 0; Bacteria - 14; Metazoa - 0; Fungi - 6; Plants - 42; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). | chr1:9802120-9803775 FORWARD LENGTH=212