MLOC_78143 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains30.106541.034734.551639.0972
LEAShoots from the seedlings (10 cm shoot stage)42.167836.667942.274636.4904
INF1Young developing inflorescences (5mm)187.027209.511220.301180.357
INF2Developing inflorescences (1-1.5 cm)126.804177.47144.515177.258
ROORoots from the seedlings (10 cm shoot stage)46.133864.6352.856677.3462
NODDeveloping tillers at six leaf stage, 3rd internode39.317785.695453.3287271.13
CAR5Developing grain, bracts removed (5 DPA)64.484360.896464.963564.5007
CAR15Developing grain, bracts removed (15 DPA)3.929034.506625.002710.6602



CDS Structure of MLOC_78143






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_78143.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK251623.1NoneNoneNoneNone
MLOC_78143.2CUST_6674_PI427708080AvailableAvailablecontig_78836 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os05g49770.1 +2 0.0 992 523/605 (86%) 13105.m05329 protein CTP synthase, putative, expressed
TAIR PP10 AT3G12670.1 +2 0.0 849 450/598 (75%) | Symbols: emb2742 | CTP synthase family protein | chr3:4020351-4024086 REVERSE LENGTH=591