MLOC_78140 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.3794530.3295260.6018080.303498
LEAShoots from the seedlings (10 cm shoot stage)0.1462030.2388290.07379140.104206
INF1Young developing inflorescences (5mm)0.055794200.2364320.0737543
INF2Developing inflorescences (1-1.5 cm)0.4120640.1272630.2778510.236021
ROORoots from the seedlings (10 cm shoot stage)0.1821520.1056150.4698140.141074
NODDeveloping tillers at six leaf stage, 3rd internode0.1023890.002704610.03325720.0264752
CAR5Developing grain, bracts removed (5 DPA)0.1473690.1754760.1144210.10859
CAR15Developing grain, bracts removed (15 DPA)812.037831.214842.8531290.08



CDS Structure of MLOC_78140






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_78140.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_78140.1CUST_16490_PI427708080AvailableAvailablecontig_78821 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os03g41419.1 +1 9e-111 363 182/254 (72%) 13103.m04459 protein serpin domain containing protein, putative, expressed
TAIR PP10 AT1G47710.1 +1 3e-82 275 140/259 (54%) Serine protease inhibitor (SERPIN) family protein | chr1:17558271-17560061 FORWARD LENGTH=391