MLOC_78133 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains000.0491830.0433333
LEAShoots from the seedlings (10 cm shoot stage)0000
INF1Young developing inflorescences (5mm)0000
INF2Developing inflorescences (1-1.5 cm)0000
ROORoots from the seedlings (10 cm shoot stage)0000
NODDeveloping tillers at six leaf stage, 3rd internode0.1645270.18482900.626131
CAR5Developing grain, bracts removed (5 DPA)29.137333.584829.512335.1543
CAR15Developing grain, bracts removed (15 DPA)0.09734540.05735980.06972640.217607



CDS Structure of MLOC_78133






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_78133.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_78133.1CUST_10418_PI427708083AvailableAvailablecontig_78786 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os03g04020.1 +2 2e-104 314 186/247 (75%) 13103.m00408 protein expansin precursor, putative, expressed
TAIR PP10 AT3G45970.1 +2 5e-75 237 134/248 (54%) | Symbols: ATEXLA1, EXPL1, ATEXPL1, ATHEXP BETA 2.1, EXLA1 | expansin-like A1 | chr3:16896238-16897189 FORWARD LENGTH=265