morexGenes - Barley RNA-seq Database

Predicted Gene MLOC_78083

Gene IDMLOC_78083
Source Contig contig_785843

Gene Data

|FPKM Values|
|CDS Structures|
|Gene Cluster Members|
|Homology to Models|

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MLOC_78083 FPKM values

FPKM by Treatment	FPKM by Replicate
There are no FPKM-by-treatment values calculated for this gene.

Treatment ID	Treatment Description	Rep 1 FPKM	Rep 2 FPKM	Rep 3 FPKM	Treatment FPKM
EMB	4-day embryos dissected from germinating grains	7.23309	5.36327	5.93789	0
LEA	Shoots from the seedlings (10 cm shoot stage)	7.10004	6.98998	10.0639	0
INF1	Young developing inflorescences (5mm)	2.11669	5.56443	2.98344	0
INF2	Developing inflorescences (1-1.5 cm)	3.72125	5.77121	3.95922	0
ROO	Roots from the seedlings (10 cm shoot stage)	5.86507	8.9792	13.4424	0
NOD	Developing tillers at six leaf stage, 3rd internode	3.54709	9.48086	2.88019	0
CAR5	Developing grain, bracts removed (5 DPA)	5.39656	6.35084	2.96902	0
CAR15	Developing grain, bracts removed (15 DPA)	1.00299	0.344626	1.00041	0

CDS Structure of MLOC_78083

Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by AK368916

Cluster member	Probe ID	FPKM by replicate	FPKM by treatment	Source Contig
AK368916	CUST_14283_PI427708083	None	None	None
MLOC_1149.1	None	Available	None	contig_1097915 (Not mapped)
MLOC_1271.1	None	Available	None	contig_1110846 (Not mapped)
MLOC_2547.1	None	Available	None	contig_1227034 (Not mapped)
MLOC_28954.1	None	Available	None	contig_1962374 (Mapped)
MLOC_33212.1	None	Available	None	contig_2353928 (Mapped)
MLOC_35592.1	None	Available	None	contig_2503541 (Not mapped)
MLOC_48232.1	None	Available	None	contig_319905 (Mapped)
MLOC_50589.1	None	Available	None	contig_362563 (Mapped)
MLOC_60356.1	None	Available	Available	contig_443084 (Not mapped)
MLOC_60373.1	None	Available	None	contig_443225 (Not mapped)
MLOC_67306.1	None	Available	None	contig_528617 (Not mapped)
MLOC_75404.1	None	Available	None	contig_678388 (Not mapped)
MLOC_78035.1	None	Available	None	contig_783693 (Not mapped)
MLOC_78083.1	None	Available	None	contig_785843 (Not mapped)

Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

Database	Hit	Frame	E-value	Score	% Identity	Description
Rice PP6	None	-	-	-	-	-
TAIR PP10	None	-	-	-	-	-