MLOC_78036 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains2.307191.626891.43261.76125
LEAShoots from the seedlings (10 cm shoot stage)2.58452.480732.903642.20871
INF1Young developing inflorescences (5mm)2.727174.055053.874993.08546
INF2Developing inflorescences (1-1.5 cm)2.240842.758522.769422.78228
ROORoots from the seedlings (10 cm shoot stage)4.473722.625292.835573.36211
NODDeveloping tillers at six leaf stage, 3rd internode2.397972.600793.997018.60201
CAR5Developing grain, bracts removed (5 DPA)3.682223.56164.078883.59268
CAR15Developing grain, bracts removed (15 DPA)11.70919.5370310.377824.6938



CDS Structure of MLOC_78036






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_78036.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_78036.2CUST_16482_PI427708080AvailableAvailablecontig_78371 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os03g10850.1 +2 4e-97 300 165/187 (88%) 13103.m01221 protein FAD-linked sulfhydryl oxidase ALR, putative, expressed
TAIR PP10 AT1G49880.1 +2 9e-61 203 85/125 (68%) | Symbols: Erv1 | Erv1/Alr family protein | chr1:18464081-18465914 FORWARD LENGTH=191