MLOC_78015 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains74.604778.842582.542877.2248
LEAShoots from the seedlings (10 cm shoot stage)56.334334.622335.631936.3456
INF1Young developing inflorescences (5mm)106.28588.782384.139577.5267
INF2Developing inflorescences (1-1.5 cm)49.28947.779149.759951.1793
ROORoots from the seedlings (10 cm shoot stage)41.161646.117847.977552.8591
NODDeveloping tillers at six leaf stage, 3rd internode7.982986.7626914.328727.1538
CAR5Developing grain, bracts removed (5 DPA)68.318769.963277.709365.7192
CAR15Developing grain, bracts removed (15 DPA)15.476213.340813.949831.3577



CDS Structure of MLOC_78015






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_78015.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK359353NoneNoneNoneNone
MLOC_78015.1CUST_6669_PI427708080AvailableAvailablecontig_78292 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os03g18810.1 +1 0.0 773 401/431 (93%) 13103.m02251 protein aminotransferase, classes I and II, domain containing protein, expressed
TAIR PP10 AT4G33680.1 +1 0.0 672 338/422 (80%) | Symbols: AGD2 | Pyridoxal phosphate (PLP)-dependent transferases superfamily protein | chr4:16171847-16174630 REVERSE LENGTH=461