- Predicted Gene MLOC_78015
MLOC_78015 FPKM values
FPKM by Treatment | FPKM by Replicate |
|
|
Treatment ID | Treatment Description | Rep 1 FPKM | Rep 2 FPKM | Rep 3 FPKM | Treatment FPKM |
---|
EMB | 4-day embryos dissected from germinating grains | 74.6047 | 78.8425 | 82.5428 | 77.2248 |
LEA | Shoots from the seedlings (10 cm shoot stage) | 56.3343 | 34.6223 | 35.6319 | 36.3456 |
INF1 | Young developing inflorescences (5mm) | 106.285 | 88.7823 | 84.1395 | 77.5267 |
INF2 | Developing inflorescences (1-1.5 cm) | 49.289 | 47.7791 | 49.7599 | 51.1793 |
ROO | Roots from the seedlings (10 cm shoot stage) | 41.1616 | 46.1178 | 47.9775 | 52.8591 |
NOD | Developing tillers at six leaf stage, 3rd internode | 7.98298 | 6.76269 | 14.3287 | 27.1538 |
CAR5 | Developing grain, bracts removed (5 DPA) | 68.3187 | 69.9632 | 77.7093 | 65.7192 |
CAR15 | Developing grain, bracts removed (15 DPA) | 15.4762 | 13.3408 | 13.9498 | 31.3577 |
CDS Structure of MLOC_78015
Members of Gene Cluster
This cluster has a confidence assignment of
High Confidence.
The gene has a transcript that is part of a cluster represented by
MLOC_78015.1
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)
Database | Hit | Frame | E-value | Score | % Identity | Description |
---|
Rice PP6 |
LOC_Os03g18810.1 |
+1 |
0.0 |
773 |
401/431 (93%) |
13103.m02251 protein aminotransferase, classes I and II, domain containing protein, expressed |
TAIR PP10 |
AT4G33680.1 |
+1 |
0.0 |
672 |
338/422 (80%) |
| Symbols: AGD2 | Pyridoxal phosphate (PLP)-dependent transferases superfamily protein | chr4:16171847-16174630 REVERSE LENGTH=461 |